# Analysis and Modeling for Geostatistical Count Data

## Documentation for package ‘geoCount’ version 1.150120

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

baseline.dist | Generate Distance Samples to Build Baseline Distribution
BMCT | Perform Bayesian Model Checking
cdfU | Approximate the CDF Value from Reference Samples
cutChain | Modify Markov Chains with Burn-in and Thining
d.base | Data Set of Baseline Samples
e2dist | Calculate Distances between Transformed Residuals and Standard Normal
Earthquakes | Data Set of Earthquakes
findMode | Estimate Mode of the Posterior Samples
helloWorld | Hello
loc2U | Calculate the Distance Matrix among Given Locations
loc2U_R | Calculate the Distance Matrix among Given Locations
locCircle | Simulate Circlular Locations
locGrid | Simulate Locations on Grid
locSquad | Simulate Squared Locations
locUloc | Calculate the Distance Matrix Between Observed and Predicting Locations
locUloc_R | Calculate the Distance Matrix Between Observed and Predicting Locations
MCMCinput | Settings for the MCMC Algorithm
mixChain | Mix Parallel Markov Chains
plotACF | Auto-correlation Plot for Latent Variables
plotData | Plot Geostatistical Data
plotTexas | Plot Texas Counties
plot_baseline | Plot Baseline Samples
plot_etran | Plot Transformed Residuals
plot_pRPS | Plot Observed vs. Reference Diagnostic Statistics
pOne | Calculate One-side P-value
predY | Predict for Unsampled Locations
pRPS | Calculate P-value and RPS
repYeb | Generate Replicated Data with Estimated Parameters
repYpost | Generate Replicated Data with Posterior Samples of Latent Variables
Rhizoc | Rhizoc Data
rhoMatern | Matern Correlation Function
rhoPowerExp | Powered Exponential Correlation Function
rhoSph | Spherical Correlation Function
Rongelap | Data Set of Rongelap Island
runMCMC | Perform Robust MCMC Algorithms for GLSM
runMCMC.sf | Perform Robust MCMC Algorithms for GLSM in Parallel
runMCMCpartialPois_ | Internal Function for Robust MCMC Algorithms with Partial Posterior Sampling
runMCMC_ | Internal Function for Robust MCMC Algorithms
simData | Simulate Data Set from Generalized Linear Spatial Model on Given Locations
TexasCounty.boundary | Data Set of Texas County Boundries
TexasCounty.center | Data Set of Texas County Centers
TexasCounty.population | Data Set of Texas County Population
tranR | Calculate Transformed Residuals for Observed Data
U2Z | Convert Distance Matrix to Correlation Matrix
unifLoc | Scale Locations into A Unit Square
Weed | Weed Data