citHeader("See Section 1.2 in the User's Guide for more detail about how to cite the different edgeR pipelines.")

citEntry(
  entry = "article",
  author = "Yunshun Chen and Lizhong Chen and Aaron T L Lun and Pedro Baldoni and Gordon K Smyth",
  title = "edgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets",
  year = 2024,
  journal = "bioRxiv",
  doi = "10.1101/2024.01.21.576131",
  textVersion = "Chen Y, Chen L, Lun ATL, Baldoni PL, Smyth GK (2024). edgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets. bioRxiv doi: 10.1101/2024.01.21.576131"
)

citEntry(
  entry = "article",
  author = "Yunshun Chen and Aaron T L Lun and Gordon K Smyth", 
  title = "From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline", 
  year = 2016,
  journal = "F1000Research",
  volume = "5",
  pages = "1438",
  doi = "10.12688/f1000research.8987.2",
  textVersion = "Chen Y, Lun ATL, Smyth GK (2016). From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. F1000Research 5, 1438"
)

citEntry(
  entry = "article",
  author = "Davis J McCarthy and Yunshun Chen and Gordon K Smyth", 
  title = "Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation", 
  year = 2012,
  journal = "Nucleic Acids Research",
  volume = "40",
  number = "10",
  pages = "4288-4297",
  doi = "10.1093/nar/gks042",
  textVersion = "McCarthy DJ, Chen Y and Smyth GK (2012). Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Research 40(10), 4288-4297"
)

citEntry(
  entry = "article",
  title = "edgeR: a Bioconductor package for differential expression analysis of digital gene expression data",
  author = "Mark D Robinson and Davis J McCarthy and Gordon K Smyth",
  journal = "Bioinformatics",
  volume = "26",
  number = "1",
  pages = "139-140",
  year = 2010,
  doi = "10.1093/bioinformatics/btp616",
  textVersion = "Robinson MD, McCarthy DJ and Smyth GK (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26(1), 139-140"
)
