Miller2015              Miller et al. (2015)
Thistlethwaite2020      Thistlethwaite et al. (2020)
Wangler2017             Wangler et al. (2017)
cohorts_coded           Disease cohorts with coded identifiers
data.combineData        Combine datasets
data.imputeData         Impute missing values
data.surrogateProfiles
                        Generate surrogate profiles
data.zscoreData         Z-transform available data
graph.connectToExt      Connect a node to its unvisited "extended"
                        neighbors
graph.diffuseP1         Diffuse Probability P1 from a starting node
graph.diffusionSnapShot
                        Capture the current state of probability
                        diffusion
graph.naivePruning      Network pruning for disease-specific network
                        determination
graph.netWalkSnapShot   Capture the current location of a network
                        walker
mle.getEncodingLength   Minimum encoding length
mle.getMinPtDistance    Get minimum patient distances
mle.getPtBSbyK          Generate patient-specific bitstrings
mle.getPtDist           CTDncd: A network-based distance metric.
multiNode.getNodeRanks
                        Generate multi-node node rankings ("adaptive"
                        walk)
singleNode.getNodeRanksN
                        Generate single-node node rankings ("fixed"
                        walk)
stat.entropyFunction    Entropy of a bit-string
stat.fishersMethod      Fisher's Combined P-value
stat.getDirSim          DirSim: The Jaccard distance with
                        directionality incorporated.
