name.milesparker.epi.plague
Class Epidemic3D

java.lang.Object
  extended by org.ascape.model.AscapeObject
      extended by org.ascape.model.Agent
          extended by org.ascape.model.LocatedAgent
              extended by org.ascape.model.Cell
                  extended by org.ascape.model.CellOccupant
                      extended by org.ascape.model.Scape
                          extended by name.milesparker.epi.plague.Epidemic
                              extended by name.milesparker.epi.plague.Epidemic3D
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.EventListener, ControlListener, ScapeListener, Location, Node, SpaceContext, HasName, RandomFunctions, IGraphicsAdapted

public class Epidemic3D
extends Epidemic

Epidemic Java Implementation. A simple model of epidemic dynamics. We define individual agents with different disease states. The progression of disease moves from succeptible to exposed to infectious (either symptomatic or asymptomatic) to some outcome state. Agents can transmit infection to their immediate neighbors. For some background on the general approach, see Joshua M. Epstein. "Generative Social Science". 2006. Princeton. Copyright 2009, Miles Parker. Released under Eclipse Public License. All uses should be attributed. Generated by AMF for model: EpidemicPlague.metaabm in project: org.eclipse.amp.amf.examples.escape

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from class org.ascape.model.Scape
Scape.ConditionalIterator, Scape.DrawFeatureObservable
 
Field Summary
 
Fields inherited from class org.ascape.model.Scape
AGENT_ORDER, agentsPerIteration, ALL_AGENTS, CLEAR_STATS_RULE, COLLECT_STATS_RULE, COMPARE_ORDERED_QUALIFIERS, COMPLETE_TOUR, copyrightAndCredits, CREATE_GRAPHIC_VIEW_RULE, CREATE_RULE, CREATE_SCAPE_RULE, CREATE_VIEW_RULE, EXECUTE_RULES_RULE, INITIAL_RULES_RULE, initialRules, prototypeAgent, REPEATED_DRAW, RULE_ORDER, version
 
Fields inherited from class org.ascape.model.CellOccupant
PLAY_HOST_RULE, RANDOM_WALK_AVAILABLE_RULE
 
Fields inherited from class org.ascape.model.Cell
CALCULATE_NEIGHBORS_RULE, neighbors, PLAY_NEIGHBORS_RULE, PLAY_RANDOM_NEIGHBOR_RULE
 
Fields inherited from class org.ascape.model.LocatedAgent
agentSize, coordinate, MOVE_RANDOM_LOCATION_RULE, RANDOM_WALK_RULE, thisUpdate
 
Fields inherited from class org.ascape.model.Agent
DEATH_RULE, FISSIONING_RULE, FORCE_DIE_RULE, FORCE_FISSION_RULE, FORCE_MOVE_RULE, INITIALIZE_RULE, ITERATE_AND_UPDATE_RULE, ITERATE_RULE, METABOLISM_RULE, MOVEMENT_RULE, PLAY_OTHER, UPDATE_RULE
 
Fields inherited from class org.ascape.model.AscapeObject
ARBITRARY_SEED, name, PLATFORM_DEFAULT_COLOR, scape
 
Constructor Summary
Epidemic3D()
           
 
Method Summary
 void createGraphicViews()
           
 
Methods inherited from class name.milesparker.epi.plague.Epidemic
calculateTimeStep, clone, create2DViews, createChartViews, createFleaPrototype, createGraphViews, createIndividualPrototype, createRatPrototype, createScape, getCaseMortalityRate, getChildren, getCity, getCityDimensions, getCityHeight, getCityWidth, getFleaCount, getFleaRange, getFleaScape, getGraphicsAdapter, getIndividualCount, getIndividualScape, getInitialInfectionProbability, getMaxContactTransmissionProbability, getMaxPeriodAsymptomInfection, getMaxPeriodExposure, getMaxPeriodSymptomInfection, getMinContactTransmissionProbability, getMinPeriodAsymptomInfection, getMinPeriodExposure, getMinPeriodSymptomInfection, getMovementProbability, getName, getPeriodsperDay, getRatCount, getRatScape, getUID, main, scapeSetup, setCaseMortalityRate, setCity, setCityDimensions, setCityHeight, setCityWidth, setFleaCount, setFleaRange, setIndividualCount, setInitialInfectionProbability, setMaxContactTransmissionProbability, setMaxPeriodAsymptomInfection, setMaxPeriodExposure, setMaxPeriodSymptomInfection, setMinContactTransmissionProbability, setMinPeriodAsymptomInfection, setMinPeriodExposure, setMinPeriodSymptomInfection, setMovementProbability, setPeriodsperDay, setRatCount, startSimulationAgentChild
 
Methods inherited from class org.ascape.model.Scape
add, add, add, add, addAll, addDrawFeature, addInitialRule, addInitialRule, addRule, addRule, addScapeListener, addScapeListenerFirst, addStatCollector, addStatCollectorIfNew, addStatCollectors, addView, addView, addView, addViews, addViews, addViews, assignParameters, assignParameters, calculateDistance, calculateDistance, clear, construct, contains, containsAll, contentsToString, countWithin, createNonGraphicViews, createSelfView, createViews, createViews, environmentQuiting, execute, execute, executeOnMembers, executeOnMembers, executeOnMembers, executeOnMembers, executeOnRoot, executeOnRoot, find, findMaximum, findMaximum, findMaximumWithin, findMinimum, findMinimum, findMinimumWithin, findNearest, findRandom, findRandom, findRandom, findRandomCoordinate, findWithin, get, get, getAgentsPerIteration, getAllScapes, getCollectStats, getData, getDescription, getDrawFeatures, getDrawFeaturesObservable, getEnvironment, getExecutionOrder, getExecutionStyle, getExtent, getHome, getHTMLDescription, getInitialRules, getIteration, getIterationsPerRedraw, getModel, getPausePeriod, getPeriod, getPeriodDescription, getPeriodName, getPrototype, getPrototypeAgent, getRoot, getRules, getRunner, getScapeListeners, getSize, getSpace, getStartPeriod, getStatCollectors, getStopPeriod, getSuperScape, getThreadCount, getUIEnvironment, getUserEnvironment, hasWithin, initialize, isAllViewsUpdated, isAutoCreate, isCellsRequestUpdates, isEmpty, isGraphic, isHome, isLifeOfScape, isListenersAndMembersCurrent, isMembersActive, isMutable, isPaused, isPeriodic, isPopulateOnCreate, isRoot, isRunning, isScapeListener, isSerializable, isStartOnOpen, isUpdateNeeded, isValidPeriod, isViewSelf, iterator, listenerOrMemberUpdated, listenerUpdated, memberUpdated, moveAway, moveToward, newAgent, newAgent, notifyViews, notifyViews, populate, remove, remove, removeAll, removeDrawFeature, removeScapeListener, respondControl, respondDrawFeature, retainAll, retrieveAllAccessors, retrieveAllAccessorsOrdered, retrieveModelAccessorsOrdered, save, save, scapeAdded, scapeClosing, scapeDeserialized, scapeInitialized, scapeIterated, scapeIterator, scapeIterator, scapeIterators, scapeNotification, scapeRandomIterator, scapeRemoved, scapeStarted, scapeStopped, search, searchMax, searchMin, set, set, set, set, setAgentsPerIteration, setAutoCreate, setAutoRestart, setCellsRequestUpdates, setCollectStats, setCollectStats, setDescription, setEarliestPeriod, setExecutionOrder, setExecutionStyle, setExtent, setExtent, setExtent, setHome, setHTMLDescription, setInitialRules, setIterationsPerRedraw, setIterationsPerRedraw, setLatestPeriod, setMembersActive, setPaused, setPausePeriod, setPeriodic, setPeriodName, setPopulateOnCreate, setPrototypeAgent, setRunner, setRunning, setSerializable, setSize, setSpace, setStartOnOpen, setStartPeriod, setStopPeriod, setSuperScape, setThreadCount, setViewSelf, size, toArray, toArray, toString, withinIterator
 
Methods inherited from class org.ascape.model.CellOccupant
die, findAvailableNeighbors, findNearest, findNearest, findNearest, findNearest, findNearest, findNeighbors, findNeighborsOnHost, findRandomAvailableNeighbor, findRandomNeighbor, findRandomNeighborOnHost, findWithin, findWithin, findWithin, getCoordinate, getHostCell, getHostScape, leave, moveAway, moveTo, moveToRandomLocation, moveToward, playNeighbors, playRandomNeighbor, randomWalk, randomWalkAvailable, setHostCell, setHostScape
 
Methods inherited from class org.ascape.model.Cell
calculateNeighbors, countNeighbors, findOccupants, findRelative, getDistance, getNeighbors, getNeighbors, getNetwork, getOccupant, hostedCondition, isAvailable, removeOccupant, setNeighbors, setNeighborsList, setNetwork, setOccupant
 
Methods inherited from class org.ascape.model.LocatedAgent
calculateDistance, calculateDistance, countWithin, countWithin, countWithin, findMaximumWithin, findWithin, getAgentSize, hasWithin, hasWithin, hasWithin, isUpdateNeeded, moveAway, moveAway, moveTo, moveToward, moveToward, requestUpdate, requestUpdateNext, setAgentSize, setCoordinate
 
Methods inherited from class org.ascape.model.Agent
clearDeleteMarker, death, deathCondition, execute, execute, fission, fissionCondition, fissioning, getColor, getColor, getImage, getImage, getPlatformColor, isDelete, isInitialized, iterate, markForDeletion, metabolism, move, movement, movementCondition, play, scapeCreated, setInitialized, setScape, update
 
Methods inherited from class org.ascape.model.AscapeObject
diffDeep, diffDeep, diffDeepBFS, diffDeepDFS, diffDeepValidate, diffDeepVisit, equalsDeep, equalsDeep, equalsDeep, getComparisonStream, getRandom, getRandomSeed, getScape, randomInRange, randomInRange, randomIs, randomToLimit, reseed, setComparisonStream, setName, setRandom, setRandomSeed
 
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface java.util.Collection
equals, hashCode
 
Methods inherited from interface org.ascape.model.event.ScapeListener
getScape
 
Methods inherited from interface org.ascape.model.space.Location
clearDeleteMarker, isDelete, markForDeletion, setCoordinate
 

Constructor Detail

Epidemic3D

public Epidemic3D()
Method Detail

createGraphicViews

public void createGraphicViews()

Overrides:
createGraphicViews in class Epidemic